KAPattern Result

KAPattern result for the system: C:\Work\K-Patten\04-23-09\fumarase

Computational Bioengineering Group @ BBC

Medical College of Wisconsin MCW

Here is the result:

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Enzyme forms:

E 1 = k6k-1k-3k5C+k6k-1k-3k-2+k6k-1k-3k-4+k6k-1k5Ck4A+k6k-1k-2k4A+k6k-3k5Ck2B+k6k-3k-4k2B+k6k5Ck2Bk4A+k-1k-3k-2k-5+k-1k-3k-4k-5+k-1k-2k-5k4A+k-3k-4k-5k2B

E 2 = k-6Pk5Ck-1k-3+k-6Pk-1k-3k-2+k-6Pk-1k-3k-4+k-6Pk5Ck-1k4A+k-6Pk-1k-2k4A+k-6Pk5Ck-3k2B+k-6Pk-3k-4k2B+k-6Pk5Ck2Bk4A+k5Ck2Bk1Ak-3+k5Ck4Ak3Bk-1+k5Ck2Bk4Ak1A+k5Ck2Bk4Ak3B

E 3 = k1Ak6k-3k5C+k1Ak-2k6k-3+k1Ak6k-3k-4+k1Ak6k5Ck4A+k1Ak-2k6k4A+k-2k-5k-6Pk-3+k-2k4Ak3Bk6+k-2k-5k4Ak-6P+k1Ak-2k-3k-5+k1Ak-3k-4k-5+k1Ak-2k-5k4A+k-2k-5k4Ak3B

E 4 = k-5k-6Pk-1k-3+k2Bk1Ak6k-3+k4Ak3Bk6k-1+k-5k4Ak-6Pk-1+k2Bk4Ak1Ak6+k-5k2Bk-6Pk-3+k2Bk4Ak3Bk6+k-5k2Bk4Ak-6P+k-5k2Bk1Ak-3+k-5k4Ak3Bk-1+k-5k2Bk4Ak1A+k-5k2Bk4Ak3B

E 5 = k3Bk6k-1k5C+k3Bk6k-1k-2+k3Bk-4k6k-1+k-4k-5k-6Pk-1+k-4k2Bk1Ak6+k3Bk6k5Ck2B+k3Bk-4k6k2B+k-4k-5k2Bk-6P+k3Bk-1k-2k-5+k3Bk-4k-1k-5+k-4k-5k2Bk1A+k3Bk-4k-5k2B

Link Matrix:

0 1 2 0 3 1 0 0 4 0 2 0 0 5 0 0 4 5 0 6 3 0 0 6 0

Kinetic Matrix:

0k-6Pk1A0k3B k600k-50 k-100k2B0 0k5Ck-20k-4 k-300k4A0

Reference:

Feng Qi, Ranjan K. Dash, Yu Han, Daniel A. Beard, "Generating Rate Equations for Enzyme Systems by Computer-Assisted Systematic Method"