Proteomics, Genomics

• Smith JR, Matus I, Greene AS., A comparison of 2-D chromatography separations using UV and (18)O quantification of proteins in similar proteomes, J Sep Sci. 2008 Feb;31(2):314-20.
• Smith JR, Matus IR, Beard DA, Greene AS., Differential expression of cardiac mitochondrial proteins, Proteomics. 2008 Feb;8(3):446-62.
• Tian Z, Greene AS, Usa K, Matus IR, Bauwens J, Pietrusz JL, Cowley AW Jr, Liang M. ,
  Renal regional proteomes in young Dahl salt-sensitive rats,
  Hypertension. 2008 Apr;51(4):899-904. Epub 2008 Mar 3.
• Tian Z, Greene AS, Pietrusz JL, Matus IR, Liang M., MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis, Genome Res. 2008 Mar;18(3):404-11. Epub 2008 Jan 29
• Mirza SP, Olivier M., Methods and approaches for the comprehensive characterization and quantification of cellular proteomes using mass spectrometry, Physiol Genomics. 2008 Mar 14;33(1):3-11. Epub 2007 Dec 27.
• Mirza SP, Halligan BD, Greene AS, Olivier M., Improved method for the analysis of membrane proteins by mass spectrometry, Physiol Genomics. 2007 Jun 19;30(1):89-94. Epub 2007 Mar 6.

Computational Bioengeering

• Fan Wu, Jianyi Zhang, Abdul Mansoor, and Daniel A. Beard. "Quantification of Energy Metabolite Concentrations from In Vivo 31P-Magnetic Resonance Spectroscopy in Normal and Ischemic Hearts", (Submitted), 2007
• Fan Wu, Feng Yang, Kalyan C. Vinnakota and Daniel A. Beard, " Computer Modeling of Mitochondral TCA Cycle, Oxidative Phosphorylation, Metabolite Transport, and Electophysiology, Supplemental Material", Journal of Biological Chemistry, Vol. 282, No. 34, pp 24525-24537, 2007.
• Fan Wu, Jereon A. Jeneson, Daniel A. Beard. " Oxidative ATP synthesis in skeletal muscle is controlled by substrate feedback". American Journal of Physiology – Cell Physiology, Vol. 292, No. 1, pp. C115-24, 2007
• Daniel A. Beard and Fan Wu. "Apparent diffusivity and Taylor dispersion of water and solutes in capillary beds" (submitted), 2007.
• Ren J., Wang W.X., Qi Feng, "Randomness enhances cooperation: a resonance type phenomenon in evolutionary games", Phys. Rev. E, 75, 045101(R), 2007
• Huang M., Camara A., Qi Feng, Stowe, D.F., Beard D.A., "Mitochondrial Inner Membrane Electrophysiology Assessed
  by Rhodamine-123 Transport and Fluorescence", FASEB J, 20(5): A1300, 2006.
• Yang F., Qi Feng, Vinnakota K., Beard D.A., "Multiscale biochemical network and drug distribution modeling for screening metabolic interactions.", BMES, 2006, Chicago, 727.
• Qi Feng, Yang F., Qian H., Beard D.A., BMES,"Model-based analysis of the purine nucleotide cycle regulatory role in the muscle energy metabolism." 2006, Chicago, 481.
• Vinnakota KC and Bassingthwaighte JB., " Myocardial density and composition: a basis for calculating intracellular metabolite concentrations". Am J Physiol Heart Circ Physiol 286: H1742-1749, 2004.
• Vinnakota K, Kemp ML, and Kushmerick MJ. "Dynamics of Muscle Glycogenolysis Modeled with pH Time Course Computation and pH-Dependent Reaction Equilibria and Enzyme Kinetics". Biophys J 91: 1264-1287, 2006.
• Chen X., Buerk D.G., Barbee K.A. and Jaron D., "A Model of NO/O2 Transport in Capillary-perfused Tissue Containing an Arteriole and Venule Pair". Annals of Biomedical Engineering, 35(4): 517-529, Apr 2007
• Chen X., Jaron D., Barbee K.A., and Buerk D.G., "The Influence of Radial RBC Distribution, Blood Velocity Profiles, and Glycocalyx on NO/O2 Co-transport", Journal of Applied Physiology, 100(2): 482-92, Feb 2006.